You had either contributions to or took distributions from your HSA, right? If so, you need to run through the HSA interview again. This is so that TurboTax will generate form 8889 which the IRS requires.
To do the HSA interview, please do a Search (upper right) for hsa and then click on the jump-to link. This will take you straight to the HSA interview.
I can't speak to the vagaries of how or why the step-by-step process works.
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