When you entered the 1099-R, in the screen or two after the entry, did you see the question on whether you had this transferred to an HSA? And you answered "yes" (to your HSA)?
Did you make any other contributions to your HSA in 2019? The HFD is counted as a contribution against the annual limit just like any other contribution.
Did you go back through the HSA interview? Do a Search (upper right) for hsa and click on the jump-to link. Go all the way to the end of the interview.
NOTE: there are two 8889s on your return, the 8889-T for the taxpayer and the 8889-S for the spouse (even if you don't have one). Make sure that the HFD didn't end up on the wrong 8889.
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