What she can do is when she indicates that she is Married filing Separately in the MY INFO section of the return, the first screen is where she enters your information, name, etc. The very next screen after that will ask select any that apply. Make sure she did not or does not check the box that says Either myself or my Husband claim itemized deductions. This will place her in the standard deduction filing status.
As an added precaution, i would suggest she remove all entries she made have made regarding itemized deductions.
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