Health Savings Account (HSA) contributions made through payroll deductions should be reported in Box 12 of your W-2 using Code W.
If for some reason they were not reported that way, then watch for the screen titled 'Did your employer tell you about any other contributions?' as you go through the HSA section of your return.
Answer 'yes' and some fields will open where you can enter 'Employer and payroll contributions not reported in Box 12 of your W-2'.
This screen should pop up just after the one where you could enter your own personal contributions.
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