Deductions & credits

I have a code w in box 12, but I also received a 1099 sa. My w2 was automatically imported and the hsa showed up, but I also clicked on the health savings account option. We don't have two hsa accounts and it was only money put in by the employee. I had to pay the fee and upgrade to the deluxe and use the 8889 form, is this correct? My son did his taxes through credit karma tax and he didn't have to use that form and efiled for free? Why was I charged? And did I click on the health savings account when I shouldn't have? HELP? Did my taxes on 2.4.2017