Technically, yes. The IRS does not presume that the 1099-SA distribution is used for medical expenses.
When you enter a 1099-SA, you specify that it was used for such. This completes Form 8889, line 14a and line 15. Until you complete the Form 8889, the IRS will see the amount as a taxable distribution.
Wait until you get your refund. This is not an urgent amendment, and amending before you get it can be problematic.
After you get the refund, amend your return to add the 1099-SA and complete the Form 8889. Turbo Tax will walk you through it.
