You would not have to delete the information that was assigned to one spouse or the other. For instance, when you enter your W-2 form, you indicate that it is for you or your spouse, so you could leave your W-2 in the federal program and it won't show up on the WV return since it will be for your spouse.
The only problem might be that you may have to change the tax filer listed on the federal return. If you are the filer and list your spouse as such, then when you do the state return it will treat you as the tax filer.
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