@alexandra11
Are HSA contributions showing up as an income item on your federal return? Probably on line 8 of Schedule 1 (1040)? HSA contributions are not normally income items unless you had excess contributions.
Alternatively, if you had HSA contributions on your W-2 (in box 12 with a code of 12) but had not gone through the HSA interview yet in order to show that you had HDHP coverage, then the code W amount will appear on form IT-360.1 as income (even though it won't be income when you properly complete your return).
So let's figure out why your HSA contributions are income first, then we can work on New York.
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