Unfortunately we don't have access to your return, so we can't see what information the program is giving you nor what you have input. However, your premise is correct. New Jersey uses Column A to determine how much they would tax all of the income, and column B is to prorate to the amount of income attributable to NJ. You might want to contact customer service to make sure your inputs are correct and, if so, then if the program is calculating correctly.
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