I figured it out. There was a box where you enter in the New York amount on a separate page. If you entered the info in, it will continue to override the calculated amount from the previous page. Also, make sure you enter that you have income from another state on your Personal Info page. It's in the Other State Income section at the bottom. Because this income is included in both W-2s, I wasn't sure if I should consider the second W-2 as "Other Income" and left it blank. If you don't enter another state in the Personal Info page, the NY state form seems to get overridden.
