Turbo Tax has all the forms you need for your situation.
Each state has rules on how to handle spouse living separately. The federal government will allow you to file joint of married filing separate.
Here is a link to states and their instructions.
There is a difference between living apart and happily married working together with a home base versus legally separated and waiting for divorce. Each state has different residency rules.
If you would reply and clarify your situation, we can be of more help.
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