Yes, you are going to have to file an IT 140 NRS with the State of West Virginia to get back the money withheld.
You are going to have to file in both PA and WV this year. You can file both returns through TurboTax. If you have not yet informed your employer that you are a PA resident, I would do so now.
Essentially you are going to have a PA return with a large balance due and a WV return with a large refund. If you file early, the payment will not be due until April 15th so you will have your refund from WV before you have to pay PA.
You can find out more information about PA taxes and the reciprocity agreement here. Here is the IT 140 NRS form here.
aBNAL
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