TT will ask you in what states you lived and in what states you worked. Where the company itself is located doesn't matter. Where you worked and lived does.
Since you were an employee you will have a W2 to enter when TT asks you about that.
If the W2 shows withholding in CA and you did not work in CA, you can probably file a non-resident CA return and get a refund. Often for small amounts people just let that go. You can check the CA tax website for the non-resident rules before paying for the CA state return in TT.
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