Can my wife and i file seperat state taxes? she lived at our fl house for 10 of 12 months and I lived at our ga house. she is a remote employee for a ca based company.

her company mailed her w-2 to ga .

State tax filing

Yes. If you are preparing joint federal returns, you can prepare separate state returns. The instructions for how to do this are below. 

NOTE: It's recommended to do this using the CD/Download software version instead of TurboTax online.

How do I prepare a joint federal return and separate state returns?

https://ttlc.intuit.com/replies/3301995