There are several situations in which Form 568 can't be e-filed. The situations are listed on the bottom of the form (page 2 underneath the signature section) as it appears in TurboTax.
One issue new this year is that California has added a letter in front of the EIN for new entities. If this applies, leave the letter off when entering the EIN in TurboTax.
If this is for a single member LLC filing a Schedule C, TurboTax will create Form 568 based on the answers to the questions entered both in the Schedule C section (if this is a SMLLC disregarded entity) and the California interview.
Since you said, if I understood correctly, both your Federal and California returns have been accepted and only the Form 568 was rejected, I recommend that you print the form and make the corrected U3 entry directly on the form.
Whenever you are unable to e-file Form 568, you can print it and mail it to:
Franchise Tax Board
PO Box 942857
Sacramento, CA 94257-0501
Form 3522, the payment voucher, is not supported for e-filing.
To print a form in TurboTax Online, sign in, open your return, and navigate to Tax Tools > Print Center in the left menu. Select "Print, save, or preview this year's return," choose the desired forms, and select View or Print Forms. You must pay for your return or register (if free) before printing.
If you are using a Desktop product, you can go to Forms Mode and make additional entries on the form if needed before printing.
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