There are a few of issues with that. 1. they paid all of these taxes with the previous payroll software. 2. they with held the local taxes since July 2016 and just last week told me that they can't figure out how to make the software work to pay them. and 3. IB28 section VII Indiana IRS document outlines guidelines on employer responsibility and as I read it they are responsible in my particular case due to them having a business entity in Indiana. It is a bit vague and I can't seem to get any clear answer from the Indiana IRS. They keep saying talk to your HR department.
