The program "thinks" you were a non-resident of CA during the year, which you were not. This probably has to do with your entries in the Personal Info section.
In that section, you should enter your State of Residence as MA. You should indicate that you also lived in CA, and enter the date you began living in MA. And you should indicate that you had "other state income" from NY.
Then in TurboTax you should complete your three state returns in this order: NY, CA, MA.
**Answers are correct to the best of my ability but do not constitute tax or legal advice.
