You will need to create a fake federal of MFS to create the VA MFS, per VA rules, You can either create a second account online and file just the state or you can download the software and do all the returns. The download can do up to 5 federal returns so that may be more economical.
You can easily transfer your tax file so you don't lose time redoing things. See How do I switch from TurboTax Online to the TurboTax software?
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