California Excess SDI (or VPDI) with held.

I am a California residence. I recieved a letter from State of California Franchise Tax Board saying I own a balance from tax year 2022. 

I filed CA tax form 540NR using Turbotax Desktop download. The balance is related to line 84 - Excess SDI (or VPDI) with held. I worked at two companies during 2022, hence two W2s. Company A paid VPDI $1,601(Max withhold for 2022), and company B paid SDI $1000. When TurboTax calculating line 88 - total payments, this $1000 was included into total payments. Then for line 104 - Tax due, I paid $1000 less to State of California. 

However, it seems like State of California Franchise Tax Board doesn't recognize the $1000 Excess SDI with held, and asking me to pay the $1000 + penalty + interest.

Any suggestions?