You will have to print and mail your return. Actually, it is NY state that won't let you e-file the NY return because state withholding is more than 25% of your NY wages.
Individual states control their e-filing systems and set certain parameters to identify returns that might not be legitimate or accurate. Returns that report an excessive* percentage of state tax withheld fall outside NY parameters for e-filing. By making you file by mail, it gives them the opportunity to have a human being confirm your withholding was correct.
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