Yes. This is the form required for Non-Resident Employees of the City of New York - Form 1127
Your out of city income is captured on your regular NY State income tax return. The Form 1127 on taxes NYC income and the NYC taxes withheld. If your spouse's income was outside of NYC then it is appropriate that her income is excluded.
Most New York City employees living outside of the five boroughs (hired on or after January 4, 1973) must file form NYC-1127. This form calculates the City waiver liability, which is the amount due as if the filer were a resident of NYC.
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