Looking at the actual NYS IT-204-LL I have to say I agree that that might be an error, although I cannot say for certain. If you did have any of the items listed for the question I would answer yes and then complete and file. If you answer no then you do not need to file the form and pay the fee.
The latest update for NYS in the TurboTax Business module appears to have corrected your issue. Run updates and test.
Form NYS IT-204-LL
@Maciek1980
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