Please note that it makes no difference how much was in your HSA at any given point, so please leave that aside.
I don't know what a 549NR form is, but you already have all the forms you need, I think.
"as I progressed to the CA HSA total it auto populates and said that it “found” roughly $2,800 and was including that in my total." and "Making my all-in total $7k+, without an option to adjust"
1. It auto-populates what where?
2. Where did it find $2,800 and how did it show it to you?
3. Where did it say, "it 'found roughly $2,800"? TurboTax doesn't say that. On what screen or form did you see this?
3. And where was it included in what total?
4. Making your all-in what? I don't what you are referring to nor where it is that you are describing.
You have lost me, so let's start over and be very explicit about what numbers are where.
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