State tax filing

This is a good tip (about deducting 1127 contributions on the state return), but my NY state tax return keeps getting rejected, I think because the state tax authorities don't like that my W-2 doesn't list the 1127 contributions as a bonafide tax.  I did add into box 14, but it keeps getting rejected.  I have to print out the return and mail it in, but Turbotax is giving me a warning that you're not allowed to mail in a tax return prepared by tax software, so I'm in a pickle.  Give up a $3900 refund (efiling without the 1127 contribs included) or mail it in and almost certainly get an audit since it doesn't seem that most people write off the 1127 contribs.  Advice?