Fill out the W2 as is. This will not affect your Federal return/tax in any way. If you are filing a Virginia full-year return, all of the income will flow to the state return and will calculate correctly. Just verify that there is no "other-state-tax credit" being calculated or claimed. If there is any such information, delete any entries. Do not file a North Carolina return, and you may choose to write a letter (or have your company provide you with a company letter) that the income being claimed to North Carolina is reported in error.
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