First, did your wife actually travel to WV to do the work. If she did not, If she worked from home, you do not owe any WV tax.
If she did travel and work in WV the only money she will owe WV tax on is that specific income that she earned while in WV. None of your income or your wife's retirement or joint accounts are taxable in WV.
You can still file jointly in WV, but none of your income, your joint income, or her retirement income will be on the WV return.
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