The income then would not be excluded. It would be taxed at a non-resident rate. Are using TurboTax Online or TurboTax Desktop. If you are in TurboTax Desktop you can switch to Forms mode and take a look at the City return and see if it has carried the income information forward.
Have you completed a review? If there is an amount missing in that spot it will come up in a review to fix it.
