Did you enter yourself as a part-time resident of NYC so TurboTax knows you lived outside the five boroughs for some of the year? This would be in the beginning of the New York interview.
I just did a mock-up return living in NYC for 50 days. On the page Take a look at New York credits and taxes, I got to the correct screen by scrolling all the way to the bottom for NYC Nonresident Employees Tax (NYC-1127).
@Ebony6
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