State tax filing

Hi, I am in the same position for 2020 but only spent part of the year (70 days) working for a NY company that withheld taxes to NY the entire year. I talked to the MN Department of Revenue and they said because we spent less than 180 days the M1CR form doesn't apply so we have to pay MN taxes for the time we were there despite already paying NY taxes. Is this correct? Do I go back to NY and ask for money back?