After you file

Related to above.... when I choose file an amended return, the Federal refund amount resets to 0 (which I believe is correct)  but the NY one does not.  I'm not sure that I have a "clean" copy of my original return at this point, i.e., I have forms IT 201-X pages 1-6 included.  I think TT already thinks the NY return was amended and I don't seem to be able to get it to  reset. Thoughts?  Thanks.