Had to Amend my return

We filed our taxes and were due a refund of about $3,300. Then my husband’s company gave him a 2nd W2 late. Our refund was intercepted due to being on a payment arrangement. Then when we filed our amendment, it reduced the amount of our refund to just over $2800. Will the IRS just adjust the amount intercepted already since it still would have given us the over $2800 refund with the amended return?