Amended return with overpayment

I just got my $2600 refund by direct deposit but now have an additional 10-99R to report which will increase my total Tax liability by $200.

After filling out the 1040-x I expected to pay the extra $200, but TurboTax now says I have to pay $2,800.  Does that mean I'll be getting a separate refund for the $2600?