If you Amended your Maryland return before the original return was processed and the amended returns shows a balance due, AND you included the amount of your original Refund in your Amendment, you can mail your payment to Maryland as shown on the Amended Return with the Payment Voucher.
Don't forget to Amend your Federal return also to include the W-2 you received after filing.
Here's more info on How to Amend a Tax Return.
@armando50
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