After you file

Hi, I had filed through different website. However refund amount is same. 

But I didnt realize that wife ITIN number is expired and due to this had to pay all dependents taxes. 

I did apply for ITIN renew and it did got renewed. We had asked IRS office to file for amendment once ITIN get renewed but not sure about this as there are no communication on this. 

So what do you suggest.