After you file

Thank you for all the insight and suggestions!

 

I will definitely try that (re-create doing CA first.).  I can't recall how we had done it.

 

@Opus 17  "I'm also still unclear on the current demand.  You originally said you owe $9 but you didn't specify where, I guess that is Illinois?  So she paid more than $1000 originally, and now you are being assessed $9, and separately you are being assessed an underpayment penalty?  If that is the case, it sounds like Illinois does not agree with the $8.66 shown in box 17.  It's also unclear to me how she could have no IL income, but have $9 of IL withholding--I suspect the W-2 might be incorrect.  In any case, my thinking is that IL is not giving her credit for the $9 for some reason, so they say she owes a further $9 payment."

 

Yes - this summary is correct.  Yes, we paid ~$1K with her 1040-IL return, and now they came back with the $9 underpayment and the separate estimated tax penalty.  We have also asked whether this is a W2 error and are waiting for the response from her company.

 

Thank you!