Since you filed the return you need to wait until it is processed before you do anything else. Once the amended return has gone through and the payment has left your bank account you can go in and amend your amendment to change your marital status back to MFJ. That status change shouldn't effect the amount that you owe in any way but it let's the IRS keep your marital status straight which can be a big deal depending on the state that you live in.
@jsalmieri
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