After you file

that's not how it works, and you have no choice. 

based on prior IRS announcements (not for 2022 specifically) any overpayment existing from applying the Sept and Jan payments to your tax liability is applied to 4/15/2023. The June payment is applied to any remaining tax liability and the excess is credited as a payment of the 2023 taxes on the date the payment was received.   Different rules may apply for certain Californians. If the IRS charges you penalties, you should get a notice. most likely the amount you asked to be applied to 2023 will be reduced for these penalties