Filed Amendment before receiving original refund - out 8k

I initially underreported my W2 income on my NY state tax return (didn't understand how the part-year resident income was calculated), and was due for a 9k refund from NY state. However after I discovered my error I filed an amended return and the amendment showed that I owed 8k (so I guess it nets out to a 1k refund).

 

So far, 8k has been withdrawn from my checking account by the NY state tax authority from the amended return. Should I be expecting a 9k refund to still be forthcoming?

 

[Numbers rounded to nearest 1k.]