I don't believe you should file an amended return. Topic 308 states: file an amended return if there's a change in your filing status, income, deductions, credits, or tax liability.
The IRS received the 1099-R showing the rollover. There is no change to your tax liability and no need to file.
What is happening is you got lucky so you could determine you should not file an amended return and fix it by closing out of the program.
If you do need to file a return, please reply with confirmation that you took the standard deduction originally instead of itemizing.
The meter could also have gotten a piece of data stuck -you can clear cache and cookies.
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