Since the IRS has issued a CP2000 notice, you will need to discuss this issue with the IRS. Please use the contact information in the upper right corner of the notice that you received from the IRS. If this withdrawal was indeed rolled over, you can provide the evidence to the IRS and they will make the correction.
Once the IRS is involved, all resolution has to be made with them. TurboTax does not receive any notice about your taxes once IRS accepts the return to be processed.
@Denmcd
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