PADept of Revenue sent a mail saying penalty amount waived

I submitted TT return on 2/24. It was accepted and I requested my bank to pay my state tax due on April 14.

However, I got a mail from PA revenue, stating that :

Penalty Type: Estimated Underpayment Penalty

Penalty Amount Waived: $xx.xx

Period Ending: 12/31/2022

At the bottom off the letter, it says no further action is required at this time.

TurboTax caculated I owe X amount of tax. Will this penalty amount , say Y will be deducted from the tax I owe?

How will this work? I already instructed bank through TT to pay X amount of taxes on April 14.

Thanks.