After you file

Your only real option, if you're not willing to call, is to write back to the IRS on the notice.  Explain your concerns, and your suspicion that the $400 might be a penalty of some sort. 

 

It's my opinion that it's not a penalty, as there would normally be a computation in the letter that would reflect a penalty, and the IRS would generally cite the Internal Revenue Code when assessing a penalty.

 

Looking at a transcript as suggested by ErnieS0 would also be a good start, just to see if you can locate a $400 difference anywhere. You can identify the codes on the transcript by looking in Section 8A, Master File Codes - Transaction, MF and IDRS Collection Status, Freeze and IDRS Status 48, Restrictive and Filing Requirements in the 2022 version of Document 6209 - ADP and IDRS Information,   

 

I know you're not keen on calling the IRS, but I will point out that it has a callback system that can use to connect you with a representative without waiting on hold.  If you'll call the IRS at (800) 829-1040, you should be able to follow prompts to find the callback option.