After you file

Don't Panic, your passport wont be lost.

I would suggest you to keep calling them on the number in this page and read this link https://www.irs.gov/individuals/understanding-[product key removed]e

The notice you would receive will have the specific details of rejection.

you can apply again and this time use option 2 instead of sending in the Passport. 

https://www.irs.gov/individuals/how-do-i-apply-for-an-itin

Option 2

Apply for an ITIN in-person using the services of an IRS-authorized Certifying Acceptance Agent. This will prevent you from having to mail your proof of identity and foreign status documents.