After you file

Same experience and solution for me.  TurboTax put the wrong numbers into my 1040X--they did not match the original numbers from my Form 1040.  I took an entire day figuring out what was wrong and how to correct it.  I thought at first that there was an error in my amended Form 1040.  No.  Then I thought there was a phantom entry which somehow was not reflected in my original return or my amended return.  No.  I finally discovered that TurboTax had simply made an erroneous entry on my 1040X, reflecting the wrong original AGI.

My solution--I pulled down the "view" menu and chose "forms."  I pulled up the Form 1040X.  I found the erroneous entry and corrected it--everything else recalculated properly.  Done.

Apparently this has been a bug for years.  Shame on Intuit for not fixing it.