Excess Roth IRA withdraw after taxes but before October 15th

I made an excess contribution to my Roth IRA in 2021 due to my income being too high. I tried to withdraw it before April 18th, but due to a miscommunication with the company, it was not withdrawn. I noticed that it was still there and removed it before October 15th. It was my understanding that I didn't have to pay the 6% fee if I withdrew before October 15th, but turbo tax is telling me I do. How do I amend my taxes using Turbo Tax in this situation?