After you file

I don't quite understand your question.  

  • All your taxable income is added up--wages, investments, gambling prizes, taxable portion of social security benefits, and anything else.  That's your gross income.  
  • There are some special items that reduce your gross income, that gives you adjusted gross income.  
  • Then you subtract your deductions.  That gives you taxable income.
  • Taxable income is applied to the tax tables which use the tax brackets.  That give you your income tax amount.
    • However, if part of your income is from capital gains, that tax is computed according to different rules.  It gets added to your regular income tax.
  • Then there are tax credits, which are subtracted directly from your tax owed, instead of being subtracted from your taxable income like a  deduction.  That gives your total income tax.
  • Then you add self-employment taxes (if you are self-employed) and you add certain excise taxes and penalty taxes (such as early withdrawals from IRAs). That gives your total tax.
  • Your total tax is compared to your withholding and payments and you get a refund or owe additional money.

 

Bottom line, all your taxable income is included when applied to the tax brackets, not just wages.