You did not amend your return, and only the first return transmitted was sent to IRS, as you can only e-file one return in the online program.
You need to:
Wait for the original return to be processed and you get your refund (and keep it).
Change the file back to what it was originally filed as.
Then you will file an Amended return and the refund will show as the additional amount you get when the 1098T is added.
Mail the Amended return to IRS.
https://ttlc.intuit.com/replies/3288565
