You have two (2) options:
- You can amend your return again and enter amount paid with return, Form 1040X Line 16, Total amount paid with request for extension of time to file, tax paid with original return, and additional tax paid after return was filed.
- Another option is to wait for the IRS to process your returns. They will generally catch the overpayment, send you an explanation letter and you'll be able to request the refund.
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