The tax tables vary by $50 increments so a slight change makes sense as seen here,
Tax Tables. The other thought would be if you had no tax liability, having already used credits or reduced income. You may not have a tax liability. Is your tax liability zero or zeroed out?
Do you mean that you should have a $54 refund and the program then said no refund? Did you mark payments made or received already?
Here is the form and instructions, About Form 1040-X, Amended U.S. Individual Income Tax Return.
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