Since you received the stimulus payments with the Recovery Rebate credit on your original return, then you would enter yes. The first two stimulus payments were an advance of the Recovery Rebate Credit. Answering yes would not trigger an $1,800 tax liability as stimulus payments are not considered taxable income. In addition, stimulus payments/Recovery Rebate Credit generally does not have to be repaid.
Did you enter your amended 1099 prior to this seeing your additional tax liability? The input of your additional income from your amended 1099 could have triggered the tax liability. Please go back to the entry of your 1099 form and double-check all input.
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